Information of ICE
| ICEberg ID | 5_IME |
|---|---|
| ICE Name | ermF region |
| ICEO ID | - |
| Organism | Bacteroides thetaiotaomicron |
| Size | 12761 bp |
| GC Content (%) | 38.12 |
| Insertion site | - |
| Function | R Macrolide, Lincosamide, Streptogramin B, Tetracycline |
| Species that ICE can be transferred to | - |
| Nucleotide Sequence | AJ311171 (complete IME sequence in this contig) |
| Coordinates | 2672..15432 |
| Putative oriT region | - |
| Putative relaxase | coordinates: 7955..8866; Family: MOBP |
Function tags R Antibiotic resistance V Virulence factor M Metal resistance D Defense system G Degradation S Symbiosis
The graph information of ermF region components from AJ311171
Complete gene list of ermF region from AJ311171
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | Reannotation | Rea |
|---|
The Interaction Network among ICE/IME/CIME
Detailed Informatioin of the Interaction Network
| # | ICE | Inter_Ele [Type] | Methods | Donors | Recipients | Exper_Ref |
|---|---|---|---|---|---|---|
| 1 | ermF region | CTnDOT [ICE] |  in trans | Bacteroides thetaiotaomicron | Bacteroides thetaiotaomicron | 11472924 |
| 2 | ermF region | CTnERL [ICE] | in trans | Bacteroides thetaiotaomicron | Bacteroides thetaiotaomicron | 11472924 |
| (1) Whittle G, Hund BD, Shoemaker NB, Salyers AA. (2001) Characterization of the 13-kilobase ermF region of the Bacteroides conjugative transposon CTnDOT. Appl Environ Microbiol. 2001 Aug;67(8):3488-95. [PubMed:11472924] |
| (2) Bellanger X, Payot S, Leblond-Bourget N, Guédon G. (2014) Conjugative and mobilizable genomic islands in bacteria: evolution and diversity. FEMS Microbiol Rev. 2014 Jul;38(4):720-60. [PubMed:24372381] |