Download ICEfinder 2.0
The Python-based local version of ICEfinder 2.0 is available. Please contact Hong-Yu OU.
After downloading the compressed file 'ICEfinder_linux.tar.gz', decompress it and please read the file 'README' to install and run the local version of ICEfinder 2.0.
After downloading the compressed file 'ICEfinder_linux.tar.gz', decompress it and please read the file 'README' to install and run the local version of ICEfinder 2.0.
Download ICE/IMEs
| All ICEs | DNA | Protein |
| All predicted ICEs | DNA | Protein |
| All experimental ICEs | DNA | Protein |
| All T4SS-type ICEs | DNA | Protein |
| All predicted T4SS-type ICEs | DNA | Protein |
| All experimental T4SS-type ICEs | DNA | Protein |
| All AICEs | DNA | Protein |
| All predicted AICEs | DNA | Protein |
| All experimental AICEs | DNA | Protein |
| All IMEs | DNA | Protein |
| All predicted IMEs | DNA | Protein |
| All experimental IMEs | DNA | Protein |
| All CIMEs | DNA | Protein |
| All predicted CIMEs | DNA | Protein |
| All experimental CIMEs | DNA | Protein |
| ICEs in human microbiome | DNA | Protein |
| ICEs predicted from Oral | DNA | Protein |
| ICEs predicted from Nasal | DNA | Protein |
| ICEs predicted from Gastrointestinal | DNA | Protein |
| ICEs predicted from Urogenital | DNA | Protein |
| ICEs predicted from Skin | DNA | Protein |
| Function genes | ||
| Antibiotic resistance genes (ARGs) | 3,151 acquired antibiotic resistance genes from ResFinder | |
| Virulence factor genes | 27,980 virulence factors from VFDB | |
| Metal resistance genes | 427 metal resistance genes from BacMet2 | |
| Degradation genes | 3,353 degradation genes from mibPOPdb | |
| Symbiosis genes | 443 symbiosis genes from papers | |