ICEfinder Detection of ICE/IME of bacterial genomes

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(i) Upload sequence

Begin by preparing FASTA/Genbank sequence data files. The program will predict the conjugative and accessory modules. For predicting a metagenome assembly, it is recommended to use an input file smaller than 20Mb, and only FASTA format files are accepted.

(ii) Subject dataset

1. T4SS-type ICEs/AICEs/IMEs

2. Accessory modules

Notes

You may run a trial by clicking the 'Run an example' button. We provide different types of input files so that you can see the input file types and their respective predicted output. The detailed information can also be found in the help manual. Please be aware that predicting from metagenome data can be time-consuming, taking approximately 15 minutes for a 15MB input file.



(iii) Retrieve Results

Your results will be preserved for a week