Information of ICE
| ICEberg ID | 56 |
|---|---|
| ICE Name | ICEclc (B13) |
| ICEO ID | ICEO_0000108 |
| Organism | Pseudomonas knackmussii B13 |
| Size | 102784 bp |
| GC Content (%) | 62.51 |
| Insertion site | tRNA-Gly |
| Function | G Aminophenol, Chlorocatechol degradation |
| Species that ICE can be transferred to | Pseudomonas putida; Pseudomonas aeruginosa; Cupriavidus necator |
| Nucleotide Sequence | AJ617740 (complete ICE sequence in this GenBank file) |
| Coordinates | 60..102843 |
| Putative oriT region | - |
| Putative relaxase | coordinates: 50240..52087; Family: MOBH |
Function tags R Antibiotic resistance V Virulence factor M Metal resistance D Defense system G Degradation S Symbiosis
The graph information of ICEclc (B13) components from AJ617740
Complete gene list of ICEclc (B13) from AJ617740
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | Reannotation | Rea |
|---|
The interaction information of ICEclc (B13) is not available.
| (1) Ravatn R, Studer S, Zehnder AJ, van der Meer JR. (1998) Int-B13, an unusual site-specific recombinase of the bacteriophage P4 integrase family, is responsible for chromosomal insertion of the 105-kilobase clc element of Pseudomonas sp. Strain B13. J Bacteriol. 1998 Nov;180(21):5505-14. [PubMed:9791097] |
| (2) Sentchilo V, Zehnder AJ, van der Meer JR. (2003) Characterization of two alternative promoters for integrase expression in the clc genomic island of Pseudomonas sp. strain B13. Mol Microbiol. 2003 Jul;49(1):93-104. [PubMed:12823813] |
| (3) She Q, Shen B, Chen L. (2004) Archaeal integrases and mechanisms of gene capture. Biochem Soc Trans. 2004 Apr;32(Pt 2):222-6. [PubMed:15046576] |
| (4) Gaillard M, Vallaeys T, Vorhölter FJ, Minoia M, Werlen C, Sentchilo V, Pühler A, van der Meer JR. (2006) The clc element of Pseudomonas sp. strain B13, a genomic island with various catabolic properties. J Bacteriol. 2006 Mar;188(5):1999-2013. [PubMed:16484212] |
| (5) Gaillard M, Pernet N, Vogne C, Hagenbüchle O, van der Meer JR. (2008) Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1. Proc Natl Acad Sci U S A. 2008 May 13;105(19):7058-63. [PubMed:18448680] |
| (6) Sentchilo V, Czechowska K, Pradervand N, Minoia M, Miyazaki R, van der Meer JR. (2009) Intracellular excision and reintegration dynamics of the ICEclc genomic island of Pseudomonas knackmussii sp. strain B13. Mol Microbiol. 2009 Jun;72(5):1293-306. [PubMed:19432799] |
| (7) Gaillard M, Pradervand N, Minoia M, Sentchilo V, Johnson DR, van der Meer JR. (2010) Transcriptome analysis of the mobile genome ICEclc in Pseudomonas knackmussii B13. BMC Microbiol. 2010 May 26;10:153. [PubMed:20504315] |
| (8) Miyazaki R, van der Meer JR. (2011) A dual functional origin of transfer in the ICEclc genomic island of Pseudomonas knackmussii B13. Mol Microbiol. 2011 Feb;79(3):743-58. [PubMed:21255116] |