Information of ICE
| ICEberg ID | 235_IME |
|---|---|
| ICE Name | SGI2 [SGI1-J] |
| ICEO ID | - |
| Organism | Salmonella enterica subsp. enterica serovar Emek |
| Size | 47132 bp |
| GC Content (%) | 50.41 |
| Insertion site | 3'-end of the trmE |
| Function | R Disinfectant, Folate pathway antagonist, Phenicol, Sulphonamide, Tetracycline |
| Species that ICE can be transferred to | Escherichia coli UB1637 |
| Nucleotide Sequence | AY963803 (complete IME sequence in this contig) |
| Coordinates | 1..47132 |
| Putative oriT region | - |
| Putative relaxase | - |
Function tags R Antibiotic resistance V Virulence factor M Metal resistance D Defense system G Degradation S Symbiosis
The graph information of SGI2 [SGI1-J] components from AY963803
Complete gene list of SGI2 [SGI1-J] from AY963803
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | Reannotation | Rea |
|---|
The Interaction Network among ICE/IME/CIME
Detailed Informatioin of the Interaction Network
| # | ICE | Inter_Ele [Type] | Methods | Donors | Recipients | Exper_Ref |
|---|---|---|---|---|---|---|
| 1 | SGI2 [SGI1-J] | pRMH760 [IncC plasmid] |  in trans | Salmonella enterica | Escherichia coli | 27620651 |
| (1) Levings RS, Lightfoot D, Partridge SR, Hall RM, Djordjevic SP. (2005) The genomic island SGI1, containing the multiple antibiotic resistance region of Salmonella enterica serovar Typhimurium DT104 or variants of it, is widely distributed in other S. enterica serovars. J Bacteriol. 2005 Jul;187(13):4401-9. [PubMed:15968049] |
| (2) Levings RS, Djordjevic SP, Hall RM. (2008) SGI2, a relative of Salmonella genomic island SGI1 with an independent origin. Antimicrob Agents Chemother. 2008 Jul;52(7):2529-37. [PubMed:18443113] |
| (3) Le Hello S, Weill FX, Guibert V, Praud K, Cloeckaert A, Doublet B. (2012) Early strains of multidrug-resistant Salmonella enterica serovar Kentucky sequence type 198 from Southeast Asia harbor Salmonella genomic island 1-J variants with a novel insertion sequence. Antimicrob Agents Chemother. 2012 Oct;56(10):5096-102. [PubMed:22802251] |
| (4) Harmer CJ, Hamidian M, Ambrose SJ, Hall RM. (2016) Destabilization of IncA and IncC plasmids by SGI1 and SGI2 type Salmonella genomic islands. Plasmid. 2016 Sep-Nov;87-88:51-57. [PubMed:27620651] |
| (5) Soliman AM, Ahmed AM, Shimamoto T, El-Domany RA, Nariya H, Shimamoto T. (2017) First report in Africa of two clinical isolates of Proteus mirabilis carrying Salmonella genomic island (SGI1) variants, SGI1-PmABB and SGI1-W. Infect Genet Evol. 2017 Jul;51:132-137. [PubMed:28359833] |