Information of ICE
| ICEberg ID | 21 |
|---|---|
| ICE Name | ICEVchInd4 |
| ICEO ID | ICEO_0000012 |
| Organism | Vibrio cholerae O139 Ind4 |
| Size | 95326 bp |
| GC Content (%) | 46.87 |
| Insertion site | prfC |
| Function | D Abortive infection/Phage exclusion systems R Aminoglycoside, Phenicol, Sulphonamide D Bacteriophage Exclusion D Rst_3HP |
| Species that ICE can be transferred to | - |
| Nucleotide Sequence | GQ463141 (complete ICE sequence in this GenBank file) |
| Coordinates | 1..95326 |
| Putative oriT region | coordinates: 3489..3595; oriTDB id: 200056 TCGAGACGCCAAACAGTGATTGTTACGGCAGTTTTACGTTTGGCGTTTCGATCCAAAAGC CAAACGGATAGTGGTTTTGGCTTTTGGGGTTAATTGGATGGGGAA |
| Putative relaxase | coordinates: 40986..43136; Family: MOBH |
Function tags R Antibiotic resistance V Virulence factor M Metal resistance D Defense system G Degradation S Symbiosis
The graph information of ICEVchInd4 components from GQ463141
Complete gene list of ICEVchInd4 from GQ463141
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | Reannotation | Rea |
|---|
The interaction information of ICEVchInd4 is not available.
| (1) Marrero J, Waldor MK. (2007) The SXT/R391 family of integrative conjugative elements is composed of two exclusion groups. J Bacteriol. 2007 Apr;189(8):3302-5. [PubMed:17307849] |
| (2) Wozniak RA, Fouts DE, Spagnoletti M, Colombo MM, Ceccarelli D, Garriss G, Déry C, Burrus V, Waldor MK. (2009) Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 2009 Dec;5(12):e1000786. [PubMed:20041216] |