Information of ICE
| ICEberg ID | 1940 |
|---|---|
| ICE Name | ICEVchThd1 |
| ICEO ID | - |
| Organism | Vibrio Cholerae TSY216 |
| Size | 101083 bp |
| GC Content (%) | 47.52[47.68] |
| Insertion site | - |
| Function | R Aminoglycoside, Folate pathway antagonist, Macrolide, Sulphonamide, Tetracycline D Restriction-Modification |
| Species that ICE can be transferred to | - |
| Nucleotide Sequence | CP007653.1 (complete ICE sequence in this GenBank file) |
| Coordinates | 579719..680801 |
| Putative oriT region | coordinates: 5342..5448; oriTDB id: 200056 TCGAGACGCCAAACAGTGATTGTGACGGCAGTTTTACGTTTGGCGTTTCGATCCAAAAGC CAAACGGATAGTGGTTTTGGCTTTAGGGGTTAATTGGATGGGGAA |
| Putative relaxase | coordinates: 625684..627835; Family: MOBH |
Function tags R Antibiotic resistance V Virulence factor M Metal resistance D Defense system G Degradation S Symbiosis
The graph information of ICEVchThd1 components from CP007653.1
Complete gene list of ICEVchThd1 from CP007653.1
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | Reannotation | Rea |
|---|
The interaction information of ICEVchThd1 is not available.
| (1) Okada K, Natakuathung W, Na-Ubol M, Roobthaisong A, Wongboot W, Maruyama F, Nakagawa I, Chantaroj S, Hamada S. (2015) Characterization of 3 Megabase-Sized Circular Replicons from Vibrio cholerae. Emerg Infect Dis. 2015 Jul;21(7):1262-3. [PubMed:26079534] |