Information of ICE
| ICEberg ID | 1863 |
|---|---|
| ICE Name | ICEShaJpn1 |
| ICEO ID | - |
| Organism | Shewanella halifaxensis 6JANF4-E-4 |
| Size | 107133 bp |
| GC Content (%) | 46.81[44.67] |
| Insertion site | - |
| Function | D Abortive infection/Phage exclusion systems D Bacteriophage Exclusion R Macrolide, Phenicol, Sulphonamide D Mokosh |
| Species that ICE can be transferred to | Escherichia coli strain JW0452 |
| Nucleotide Sequence | BFBQ01000004.1 (complete ICE sequence in this GenBank file) |
| Coordinates | 213376..320508 |
| Putative oriT region | coordinates: 3694..3800; oriTDB id: 200056 TCGAGACGCCAAACAGTGATTGTTACGGCAGTTTTACGTTTGGCGTTTCGATCCAAAAGC CAAACGGATAGTGGTTTTGGCTTTTGGGGTTAATTGGATGGGGAA |
| Putative relaxase | coordinates: 265569..267720; Family: MOBH |
Function tags R Antibiotic resistance V Virulence factor M Metal resistance D Defense system G Degradation S Symbiosis
The graph information of ICEShaJpn1 components from BFBQ01000004.1
Complete gene list of ICEShaJpn1 from BFBQ01000004.1
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | Reannotation | Rea |
|---|
The interaction information of ICEShaJpn1 is not available.
| (1) Sugimoto Y, Maruyama F, Suzuki S (2018) Draft Genome Sequence of a Shewanella halifaxensis Strain Isolated from the Intestine of Marine Red Seabream (Pagrus major), Which Includes an Integrative Conjugative Element with Macrolide Resistance Genes. Genome Announc. 2018 Apr 19;6(16):e00297-18. [PubMed:29674550] |
| (2) Sugimoto Y, Kadoya A, Suzuki S (2022) An Integrative and Conjugative Element (ICE) Found in Shewanella halifaxensis Isolated from Marine Fish Intestine May Connect Genetic Materials between Human and Marine Environments. Microbes Environ. 2022;37(3):ME22038. [PubMed:36058879] |