Information of ICE
| ICEberg ID | 1429 |
|---|---|
| ICE Name | ICE_Cdi630_fic |
| ICEO ID | - |
| Organism | Clostridioides difficile 630 |
| Size | 20670 bp |
| GC Content (%) | 38.31[29.06] |
| Insertion site | - |
| Function | R Tetracycline |
| Species that ICE can be transferred to | - |
| Nucleotide Sequence | NC_009089.1 (complete ICE sequence in this GenBank file) |
| Coordinates | 585378..606047 |
| Putative oriT region | coordinates: 2494..2626; oriTDB id: 200001 TTAACCCCCCGTATCTAACAGGGGGGTACAAATCGACAGGAAACAGGCAAAAAAATAGTA GAAAATCCTTTGGTTACAAGGGATTTAGAAAATTTCGGTGTATGTCAAATGAGCTTTAAA AGTTGACATAC |
| Putative relaxase | coordinates: 587994..589218; Family: MOBT |
Function tags R Antibiotic resistance V Virulence factor M Metal resistance D Defense system G Degradation S Symbiosis
The graph information of ICE_Cdi630_fic components from NC_009089.1
Complete gene list of ICE_Cdi630_fic from NC_009089.1
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | Reannotation | Rea |
|---|
The interaction information of ICE_Cdi630_fic is not available.
| (1) Guédon G, Lao J, Payot S, Lacroix T, Chiapello H, Leblond-Bourget N (2022) FirmiData: a set of 40 genomes of Firmicutes with a curated annotation of ICEs and IMEs. BMC Res Notes. 2022 May 10;15(1):157. [PubMed:35538580] |
| (2) Lao J, Lacroix T, Guédon G, Coluzzi C, Payot S, Leblond-Bourget N, Chiapello H. (2022) ICEscreen: a tool to detect Firmicute ICEs and IMEs, isolated or enclosed in composite structures. NAR Genom Bioinform. 2022 Oct 21;4(4):lqac079. [PubMed:36285285] |