Information of ICE
| ICEberg ID | 12 |
|---|---|
| ICE Name | ICEVchBan5 |
| ICEO ID | ICEO_0000009 |
| Organism | Vibrio cholerae O1 Ban5 |
| Size | 102122 bp |
| GC Content (%) | 47.28 |
| Insertion site | prfC |
| Function | D Abortive infection/Phage exclusion systems R Aminoglycoside, Folate pathway antagonist, Phenicol, Sulphonamide D Bacteriophage Exclusion |
| Species that ICE can be transferred to | - |
| Nucleotide Sequence | GQ463140 (complete ICE sequence in this GenBank file) |
| Coordinates | 1..102122 |
| Putative oriT region | coordinates: 5756..5862; oriTDB id: 200056 TCGAGACGCCAAACAGTGATTGTGACGGCAGTTTTACGTTTGGCGTTTCGATCCAAAAGC CAAACGGATAGTGGTTTTGGCTTTAGGGGTTAATTGGATGGGGAA |
| Putative relaxase | coordinates: 46066..48216; Family: MOBH |
Function tags R Antibiotic resistance V Virulence factor M Metal resistance D Defense system G Degradation S Symbiosis
The graph information of ICEVchBan5 components from GQ463140
Complete gene list of ICEVchBan5 from GQ463140
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | Reannotation | Rea |
|---|
The interaction information of ICEVchBan5 is not available.
| (1) Marrero J, Waldor MK. (2007) The SXT/R391 family of integrative conjugative elements is composed of two exclusion groups. J Bacteriol. 2007 Apr;189(8):3302-5. [PubMed:17307849] |
| (2) Wozniak RA, Fouts DE, Spagnoletti M, Colombo MM, Ceccarelli D, Garriss G, Déry C, Burrus V, Waldor MK. (2009) Comparative ICE genomics: insights into the evolution of the SXT/R391 family of ICEs. PLoS Genet. 2009 Dec;5(12):e1000786. [PubMed:20041216] |