Information of ICE
| ICEberg ID | 1064 |
|---|---|
| ICE Name | ICEVchChnAHV1003 |
| ICEO ID | - |
| Organism | Vibrio cholerae AHV1003 |
| Size | 101856 bp |
| GC Content (%) | 47.45 |
| Insertion site | - |
| Function | D Abortive infection/Phage exclusion systems R Aminoglycoside, Folate pathway antagonist, Macrolide, Sulphonamide, Tetracycline D Restriction-Modification |
| Species that ICE can be transferred to | - |
| Nucleotide Sequence | KT151663 (complete ICE sequence in this GenBank file) |
| Coordinates | 1..101856 |
| Putative oriT region | coordinates: 95960..96066; oriTDB id: 200056 CCCCATCCAATTAACCCCTAAAGCCAAAACCACTATCCGTTTGGCTTTTGGATCGAAACG CCAAACGTAAAACTGCCGTCACAATCACTGTTTGGCGTCTCGATA |
| Putative relaxase | coordinates: 53291..55441; Family: MOBH |
Function tags R Antibiotic resistance V Virulence factor M Metal resistance D Defense system G Degradation S Symbiosis
The graph information of ICEVchChnAHV1003 components from KT151663
Complete gene list of ICEVchChnAHV1003 from KT151663
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | Reannotation | Rea |
|---|
The interaction information of ICEVchChnAHV1003 is not available.
| (1) Wang R, Yu D, Yue J, Kan B. (2016) Variations in SXT elements in epidemic Vibrio cholerae O1 El Tor strains in China. Sci Rep. 2016 Mar 9;6:22733. [PubMed:26956038] |
| (2) Ryan MP, Armshaw P, O'Halloran JA, Pembroke JT. (2017) Analysis and comparative genomics of R997, the first SXT/R391 integrative and conjugative element (ICE) of the Indian Sub-Continent. Sci Rep. 2017 Aug 17;7(1):8562. [PubMed:28819148] |