Information of ICE
| ICEberg ID | 1040 |
|---|---|
| ICE Name | ICEValA056-1 |
| ICEO ID | - |
| Organism | Vibrio alginolyticus A056 |
| Size | 89004 bp |
| GC Content (%) | 46.76 |
| Insertion site | prfC |
| Function | R Aminoglycoside, Sulphonamide D Restriction-Modification D RosmerTA |
| Species that ICE can be transferred to | - |
| Nucleotide Sequence | KR231688 (complete ICE sequence in this GenBank file) |
| Coordinates | 1..89004 |
| Putative oriT region | coordinates: 4724..4830; oriTDB id: 200056 TCGAGACGCCAAACAGTGATTGTGACGGCAGTTTTACGTTTGGCGTTTCGATCCAAAAGC CAAACGGATAGTGGTTTTGGCTTTAGGGGTTAATTGGATGGGGAA |
| Putative relaxase | coordinates: 32530..34680; Family: MOBH |
Function tags R Antibiotic resistance V Virulence factor M Metal resistance D Defense system G Degradation S Symbiosis
The graph information of ICEValA056-1 components from KR231688
Complete gene list of ICEValA056-1 from KR231688
| # | Gene | Coordinates [+/-], size (bp) | Product (GenBank annotation) | Reannotation | Rea |
|---|
The interaction information of ICEValA056-1 is not available.
| (1) Luo P, He X, Wang Y, Liu Q, Hu C. (2016) Comparative genomic analysis of six new-found integrative conjugative elements (ICEs) in Vibrio alginolyticus. BMC Microbiol. 2016 May 4;16:79. [PubMed:27145747] |
| (2) Ryan MP, Armshaw P, O'Halloran JA, Pembroke JT. (2017) Analysis and comparative genomics of R997, the first SXT/R391 integrative and conjugative element (ICE) of the Indian Sub-Continent. Sci Rep. 2017 Aug 17;7(1):8562. [PubMed:28819148] |